Below are selected publications. You will find a full record here.

2018

graph_ab_Hannah_5-5
Published in Cell

Molecular Architecture of the Mouse Nervous System. Zeisel A, Hochgerner H, Lönnerberg P, Johnsson A, Memic F, van der Zwan J, Häring M, Braun E, Borm LE, La Manno G, Codeluppi S, Furlan A, Lee K, Skene N, Harris KD, Hjerling-Leffler J, Arenas E, Ernfors P, Marklund U, Linnarsson S

DkGRbklW4AAlyn6.jpg-large
Published in Nature


RNA velocity of single cells. La Manno G, Soldatov R, Zeisel A, Braun E, Hochgerner H, Petukhov V, Lidschreiber K, Kastriti ME, Lönnerberg P, Furlan A, Fan J, Borm LE, Liu Z, van Bruggen D, Guo J, He X, Barker R, Sundström E, Castelo-Branco G, Cramer P, Adameyko I, Linnarsson S, Kharchenko PV.


Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types. Häring M*, Zeisel A*, Hochgerner H*, Rinwa P, Jakobsson JET, Lönnerberg P, La Manno G, Sharma N, Borgius L, Kiehn O, Lagerström MC, Linnarsson S, Ernfors P.

Screen Shot 2018-08-13 at 12.07.33
Published in Nature Neuroscience


Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing. Hochgerner H*, Zeisel A*, Lönnerberg P, Linnarsson S.


2017 

Screen Shot 2018-08-13 at 12.13.52
Published in Scientific Reports


STRT-seq-2i: dual-index 5′ single cell and nucleus RNA-seq on an addressable microwell array. Hochgerner H, Lönnerberg P, Hodge R, Mikes J, Heskol A, Hubschle H, Lin P, Picelli S, La Manno G, Ratz M, Dunne J, Husain S, Lein E, Srinivasan M, Zeisel A, Linnarsson S.

Screen Shot 2018-08-13 at 12.25.49
Published in Nature Neuroscience

Molecular interrogation of hypothalamic organization reveals distinct dopamine neuronal subtypes. Romanov RA*, Zeisel A*, Bakker J, Girach F, Hellysaz A, Tomer R, Alpár A, Mulder J, Clotman F, Keimpema E, Hsueh B, Crow AK, Martens H, Schwindling C, Calvigioni D, Bains JS, Máté Z, Szabó G, Yanagawa Y, Zhang MD, Rendeiro A, Farlik M, Uhlén M, Wulff P, Bock C, Broberger C, Deisseroth K, Hökfelt T, Linnarsson S, Horvath TL, Harkany T.

2016

Screen Shot 2018-08-13 at 12.28.45
Published in Cell Systems


Single-Cell Transcriptomics Reveals that Differentiation and Spatial Signatures Shape Epidermal and Hair Follicle Heterogeneity Joost S, Zeisel A, Jacob T, Sun X, La Manno G, Lönnerberg P, Linnarsson S*, Kasper M*


oligos_job
Image credit: Job van der Zwan
Published in Science

Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system. Marques S, Zeisel A, Codeluppi S, van Bruggen D, Mendanha Falcão A, Xiao L, Li H, Häring M, Hochgerner H, Romanov RA, Gyllborg D, Muñoz-Manchado AB, La Manno G, Lönnerberg P, Floriddia EM, Rezayee F, Ernfors P, Arenas E, Hjerling-Leffler J, Harkany T, Richardson WD, Linnarsson S*, Castelo-Branco G*.



Screen Shot 2018-08-13 at 12.15.57
Published in Nature Biotechnology


Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes. Fuzik J*, Zeisel A*, Máté Z, Calvigioni D, Yanagawa Y, Szabó G, Linnarsson S*, Harkany T*.

2015

Screen Shot 2018-08-13 at 12.38.26
Published in Science

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. Zeisel A*, Muñoz-Manchado AB*, Codeluppi S, Lönnerberg P, La Manno G, Juréus A, Marques S, Munguba H, He L, Betsholtz C, Rolny C, Castelo-Branco G, Hjerling-Leffler J, Linnarsson S.

2013

Screen Shot 2018-08-13 at 12.49.26
Published in Nature Methods


Quantitative single-cell RNA-seq with unique molecular identifiers. Islam S, Zeisel A, Joost S, La Manno G, Zajac P, Kasper M, Lönnerberg P, Linnarsson S.

2011

Coupled pre‐mRNA and mRNA dynamics unveil operational strategies underlying transcriptional responses to stimuli Zeisel A, Köstler WJ, Molotski N, Tsai JM, Krauthgamer R, Jacob Hirsch J, Rechavi G, Soen Y, Jung S, Yarden Y, Domany E
Published in Molecular Systems Biology

FDR control with adaptive procedures and FDR monotonicity Zeisel A, Zuk O, Domany E
Published in The Annals of Applied Statistics

2010

BMP-mediated inhibition of FGF signaling promotes cardiomyocyte differentiation of anterior heart field progenitors. Tirosh-Finkel L, Zeisel A, Brodt-Ivenshitz M, Shamai A, Yao Z, Seger R, Domany E, Tzahor E.
Published in Development